Ample documentation is provided within each individual package. All package vignettes are also available Each package provides specific documentation.

In addition, a comprehensive book as well as tutorials and workshops are available showing how the functionality from different packages can be combined into specific analysis workflows.

R for Mass Spectrometry Book

The R for Mass Spectrometry book provides a good introduction into the ecosystem of the R for Mass Spectrometry packages. It is continuously expanded to include additional topics and example use cases.


Specific use cases and extended analysis workflows are also presented as workshops (tutorials). They usually come with a dedicated docker image that provides the workshop’s source code along with all data and an R installation which includes all required packages ensuring full reproducibility.